rs237850109 SNP Detail

Summary

• ID
  rs237850109
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTCTAG AAATCTAGAT
  CTTTGCCCAC AGAAGTCTGT TTTGCACAGC TGCAACAGCC TTGCACAGTG TTACCAGCTT
  CTCTTTGCTG CATGAACCCA CACTGCTACT CAGTGCCTTA ATTTATGCTG GGTGTTGTGA
  GATTCCGACG GAAAAGGTGG AAGGCAGGTG TAGAGTGTGT GGCAGGAGGG GTGGGGGGTG
  T
  GTGTCCTGAG ACCAGCCTGG GCCTACTTGA GGCAGAAAAA ATGATTGTCA AACCTTGCAA
  GTTTACACAT TTGGGCCTAG AATAGGACAT ATCTTAAAAC ATACATATCT TAAAGGCCAA
  CAGCTACTGC TTGGGCCCCA CCCTTTAAAT ATCTCAAGAC ACACCTGGAG CTGTTTCTTA
  TCATAACCTC CCAGACACTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864988	MGP_WTSI_9_108243176	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237850109					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864988	MGP_WTSI_9_108243176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	670 bp distal
Gm57050	predicted gene, 57050	711 bp upstream
Gpx1	glutathione peroxidase 1	503 bp downstream
Rr383883	regulatory region 383883	1027 bp downstream
Rr686785	regulatory region 686785	1559 bp distal
Rr686786	regulatory region 686786	221 bp distal
Rr686787	regulatory region 686787	780 bp proximal
Rr686788	regulatory region 686788	1901 bp proximal
Tssr3010	transcription start site region 3010	1095 bp downstream
Tssr87090	transcription start site region 87090	1775 bp downstream
Tssr87091	transcription start site region 87091	1747 bp downstream
Tssr87092	transcription start site region 87092	1613 bp downstream
Tssr87093	transcription start site region 87093	1598 bp downstream
Tssr87094	transcription start site region 87094	1561 bp downstream
Tssr87095	transcription start site region 87095	1546 bp downstream
Tssr87096	transcription start site region 87096	1535 bp downstream
Tssr87097	transcription start site region 87097	925 bp downstream
Tssr87098	transcription start site region 87098	858 bp downstream
Tssr87099	transcription start site region 87099	529 bp downstream
Tssr91519	transcription start site region 91519	952 bp upstream
Tssr91520	transcription start site region 91520	861 bp upstream
Tssr91521	transcription start site region 91521	765 bp upstream
Tssr91522	transcription start site region 91522	689 bp upstream
Tssr91523	transcription start site region 91523	504 bp upstream