rs237860480 SNP Detail

Summary

• ID
  rs237860480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTAGTC TTATTTGTTC
  CTTTGAGGAC TGACGGGGGG GGGGGGGGGG AGACGTGCTT ATTAAACATG TTGCACATAC
  GTACCTTCTT TCTACAGTGT TGAGCTACAG GCACAGAGTG AACACTTCAC AGTAACGGTT
  ACAGCTTTAG CGGCAATGAC AGTAATGGAT GCTCTCCGGG ATCATCGGGT GCTCCAGGTT
  Y
  GCCTGTAGGG TCCTTTCCTC TTAGTTCTTC CAGGACCCTT GTCATTCCCC TTACCCCCTG
  CAGCTAATCA CTAGCCAGGC TTCCAGGGAA GAGTACCCAT GGTAAGAAAA CTAGACAGCT
  CTACACCCCA TCTCTGTCAT GCCTGTGACA TGGGACCCTT CTGAGCCTTG GTGTCCCCAC
  TCCATGGAAT GGGGGGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351510996	MGP_WTSI_1_135991260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237860480					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351510996	MGP_WTSI_1_135991260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1122 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1722 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Gm70614	predicted gene, 70614	1788 bp upstream
Rr366718	regulatory region 366718	1467 bp downstream
Rr396310	regulatory region 396310	1138 bp downstream
Rr396311	regulatory region 396311	458 bp downstream
Rr418807	regulatory region 418807	1799 bp distal
Rr418808	regulatory region 418808	1554 bp distal
Rr418809	regulatory region 418809	40 bp distal
Rr418810	regulatory region 418810	1008 bp distal
Tssr8854	transcription start site region 8854	1379 bp downstream
Tssr13771	transcription start site region 13771	756 bp upstream