rs237861246 SNP Detail

Summary

• ID
  rs237861246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTATGAG ACCGCGCGCG
  CGCGCGCACA CACACACACA CACACACACG TAAAAACCAT CAAAAAGTAG TCATTCCCCT
  TACTTCTAAA TGGACAGGAT GTATATACAC ACACCAAGTA TATATTACCA AATCCTAAGA
  TGTACCAACT GCAGACTTGA CTTTTAACAC AAGAAGGCCA TGCAACCGAA TAGATGGCAC
  M
  AACACCAGAC AGATCAGACT CCTTTAAGAC TGTTGTGAGG TCAGATAGCA AGTCCATTTC
  CAGTAAGCTA GAACTCTGAT CTTCCAAGTT AGGGTCCTGG GAAATGCCCA AGAGTCCAAG
  GTTCGACAAT CTCTTACACA GTACTTATAC TTAGAATTTT ATCACCTATG TAATTTAGAT
  AAGAAATTGT ACAGCCATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513542	CHEV_10_121022535	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237861246					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	768 bp proximal
Rr402304	regulatory region 402304	393 bp upstream
Rr402305	regulatory region 402305	1247 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1298 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	738 bp upstream
Tssr96044	transcription start site region 96044	774 bp upstream
Tssr99623	transcription start site region 99623	394 bp downstream
Tssr99624	transcription start site region 99624	422 bp downstream
Tssr99625	transcription start site region 99625	443 bp downstream
Tssr99626	transcription start site region 99626	1231 bp downstream
Tssr99627	transcription start site region 99627	1251 bp downstream
Tssr99628	transcription start site region 99628	1334 bp downstream
Tssr99629	transcription start site region 99629	1362 bp downstream
Tssr99630	transcription start site region 99630	1390 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1901 bp downstream