rs237864017 SNP Detail

Summary

• ID
  rs237864017
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81319311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTAGAA GTAGGCCAAG
  GGACCTTGTC TCAAAACTCA ATAGGTAATA TTTTATACAT AGCATTTTTG TGTGTTCATT
  TTTATTGAAT ATTTTTTTTA CATTTCAAAT GATATCCCCC CTTTCCCGAT CCCCCCCCCA
  AACCTCCTAT CCCATTCCCC TCCTCCTGCT TCTATGAGGG CATGCCCCAC CCACCCACCC
  G
  CCTTTGCATT CCCTTACACT GGGGCATCGA GCCTTCACAG GACCAAGGGC CTCTTTTCCC
  ATTGTTTTCC AACAAGGCTG TCCTCTGCTA CGTATGTGGC TGGAGCCATG GGTCCCTCCA
  TGTGTACTTC TTGGTTGGTG GTTTAGACCC TGGGAACTCT GGGTTGTTGA TAATGTTGTT
  TTTCTTATGG GGTTGCAAAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036805	MGP_WTSI_10_80946222	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237864017					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036805	MGP_WTSI_10_80946222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81319311 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	768 bp upstream
Cpgi1992	CpG island 1992	376 bp distal
Rr435679	regulatory region 435679	804 bp distal
Rr435680	regulatory region 435680	278 bp distal
Rr435681	regulatory region 435681	526 bp proximal
Rr435682	regulatory region 435682	979 bp proximal
Rr435683	regulatory region 435683	1521 bp proximal
Tssr98622	transcription start site region 98622	1364 bp upstream
Tssr98623	transcription start site region 98623	1327 bp upstream
Tssr98624	transcription start site region 98624	1124 bp upstream
Tssr98625	transcription start site region 98625	833 bp upstream
Tssr98626	transcription start site region 98626	824 bp upstream
Tssr98627	transcription start site region 98627	752 bp upstream