rs237872672 SNP Detail

Summary

• ID
  rs237872672
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121949057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCGGTCC TTCCGGTAGA
  GGCGCCCGAA TGCGTCACGG ACCTGCGCAG TGATTCGGAC CTTGTGACTC TCACGAGAGA
  GGCGGTCCTG CGCCCGGCAT TTGCTCAGCT TGGGGTGGAG GCGGCTCTAA ACGGAATCCT
  GCAAAAACCA CGCCTGCCCC TCCCTGCTCA GCTCAATTCA ATAATACGCC AGGGCCTTTC
  W
  GCTGCTTGTG CTGTCCTTGC TACCAAAGAT TTCTAAGGCA GGTGCTTCTT ACTCCATTGA
  AACCCTGTTG CTGGCTCCTC TTCACTTTTT GTGCTGCTCG GTTAACAGGC ATCTGGTAGT
  GCGCTTTTCT TGGTAGCAAG TACTCTTTTA AAGTCTAGAA CTAATAAAGA ACCCTCTACC
  ATTTTAAAAA AAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480141	MGP_WTSI_2_121944312	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237872672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480141	MGP_WTSI_2_121944312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121949057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	within coordinates
Gm75635	predicted gene, 75635	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	1532 bp downstream
Rr55508	regulatory region 55508	within coordinates
Rr58060	regulatory region 58060	1857 bp distal
Rr373779	regulatory region 373779	within coordinates
Spg11	SPG11, spatacsin vesicle trafficking associated	190 bp upstream
Tssr19802	transcription start site region 19802	1641 bp downstream
Tssr19803	transcription start site region 19803	22 bp downstream
Tssr25950	transcription start site region 25950	227 bp upstream
Tssr25951	transcription start site region 25951	179 bp upstream