rs237883193 SNP Detail

Summary

• ID
  rs237883193
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32904634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGAAAT CAACATTCTA
  TCAAATGAAC TTCATTCATG TCTATGTAGT CAACTCAGCA ATGGCCAAGT GGGACTTAGT
  CTTTCATGCT AGACTAAAGG GTACATCTAC AGCCCCTCTG ACCACACTGA ATTTCACTCC
  CCTGATTTCA TAACCTGATT GGAACTAGAT GACATCCTGT TAAGAGGACT TAGGGACGGG
  W
  GGATCACAAA GCTGAAAAAT CACTGACATT GTTTAGACAC AGTGCCACAC ACCTGTCCTC
  TTCACCTGGA TCAAGCACAA GCAAGCCTTA TGTGACAAGC TCAGGGATGA CGCTATGGCA
  GAGGCAAGCA GACTTTCTAG CAGACTAGAG GGCTATCCTG TGAGACTTTC ATGATATTAT
  TCCACACCCA CACCACACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364466312	MGP_WTSI_5_33089939	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237883193					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466312	MGP_WTSI_5_33089939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32904634 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	247 bp downstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	989 bp distal
Rr609421	regulatory region 609421	796 bp distal
Rr609422	regulatory region 609422	409 bp distal
Rr609423	regulatory region 609423	303 bp proximal
Rr609424	regulatory region 609424	541 bp proximal
Rr609425	regulatory region 609425	805 bp proximal
Rr609426	regulatory region 609426	1693 bp proximal
Tssr45794	transcription start site region 45794	1166 bp downstream
Tssr45795	transcription start site region 45795	741 bp downstream
Tssr50589	transcription start site region 50589	977 bp upstream
Tssr50590	transcription start site region 50590	949 bp upstream
Tssr50591	transcription start site region 50591	938 bp upstream