rs237888213 SNP Detail

Summary

• ID
  rs237888213
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21902076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGGTGG AGATCACTGC
  CCACCCTTCG CTGCCTGGTT TCGGAGGCCC TGCCACCTGA GATCCACCCA GTCCAGGCTT
  CGCTACTCTG GTTATGAAGC TCACGCCCAT TCAGCACCTG TTTCCTATGT CAGTCTGCTC
  TCTGATTTTC GACCCTCCCT CCCCCACCCC CACCCCCACC CCCTGCCTTG GTCCCCACTG
  G
  CCGCGGAGGA TGTGTGTGAA CCTCTCGGTC TGCTATGTGT CGCAGCAACT CAGGCACGTC
  CTGGCTCTCC AGTTGGTCCT GCAGTTTCAG CAGCTTTTCC TGGACAACTA CCAGCAGATT
  GTAAGCGTAG TCCTCTGAGT CCCGGTCTAA CTTCTTTCCT GCCAATACCG TATCATCCTG
  TGGTGGGGAC GGGCCAAGTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376878314	MGP_WTSI_9_21795224	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237888213					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376878314	MGP_WTSI_9_21795224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21902076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21468	CpG island 21468	1230 bp distal
Cpgi21469	CpG island 21469	555 bp distal
Cpgi21470	CpG island 21470	887 bp proximal
Gm36414	predicted gene, 36414	72 bp downstream
Odad3	outer dynein arm docking complex subunit 3	within coordinates
Rgl3	ral guanine nucleotide dissociation stimulator-like 3	1311 bp upstream
Rr206074	regulatory region 206074	275 bp distal
Tssr88431	transcription start site region 88431	1356 bp upstream
Tssr88432	transcription start site region 88432	1324 bp upstream
Tssr88433	transcription start site region 88433	1310 bp downstream