rs237890660 SNP Detail

Summary

• ID
  rs237890660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTTCT CTGATCAGGC
  CCGCGAGTTG AGTTTACTAA GAGAGTGTGC TTATAAGGGG GAAGGCCCAT CCCCACTGCC
  AGTTCATTCT CCGTGCCTGG AGCCATTCTG TCAGCACGCG GTCGCCAGGA ATGTCTCAGG
  AAGACAGGTT CAGCCTCTGA GCAGGTAGCA GAAGAGCAGG GCAGTTGTCT CTTCAAAAGG
  R
  GCCAGCCTAG TCAGAAAGTT GCACCGCAGG TGGCCCCACC TCCGAGGCAA CAAGGTCTGT
  ACCCGCCCGC TTCAGGCTGG GGGGGGGGGG GGGGGAAGCT ACAATTGGCT CCACCCATAG
  AACTTCCTGT CAGGGAATGA GGGAAGTTTT ACTTCATAGT TCAGTAGAAA ACTTGAACCA
  GGTCAAATTG GTTCCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368226790	MGP_WTSI_6_48626017	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237890660					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368226790	MGP_WTSI_6_48626017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652952 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	132 bp upstream
Gm46958	predicted gene, 46958	within coordinates
Rr629719	regulatory region 629719	744 bp distal
Rr629720	regulatory region 629720	within coordinates
Tssr56160	transcription start site region 56160	1185 bp downstream
Tssr56161	transcription start site region 56161	809 bp downstream
Tssr56162	transcription start site region 56162	96 bp upstream
Tssr56163	transcription start site region 56163	142 bp upstream
Tssr56164	transcription start site region 56164	175 bp upstream
Tssr56165	transcription start site region 56165	390 bp upstream
Tssr56166	transcription start site region 56166	1655 bp upstream