rs237895754 SNP Detail

Summary

• ID
  rs237895754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134581479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACATCTG GGTAGATCAG
  AGAGCAGAGA AAGTCTGCCC ACATTCCCTA ACTCATATAC TTCTTGTCTG ACTACATCTG
  CGTTTCCTTT TGTGCCTTGA AAAGGAAACC CAGTAGCTGT CACAGTGCTG GGCGCCTAAA
  GGTGTCAAAG TTAACCACAA GGTTTCTCCC TGGCTTGCTC CCTCCCTCCC TCCCTTCCTC
  Y
  CTTTCTTTCT TTCTTTTCCG ACACTGGAAT TGAACTTAGG GACTCAAATA TCCTAGACAA
  ATACTCTATC ACCATACTAT ATTCTGTCCC TCCTCCACTT TGTGGTGATG GTGCTGGGAA
  TCAAACCCAT GGCCTGGAAG AAACTAGGTG AATGCTCTAC CATTGAGCTA TATCCCCCAA
  GCCCTCTAAT CATTATGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss370158407	MGP_WTSI_6_134554534	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs237895754					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370158407	MGP_WTSI_6_134554534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134581479 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	718 bp downstream
Rr133397	regulatory region 133397	279 bp distal
Rr147832	regulatory region 147832	680 bp distal
Rr147833	regulatory region 147833	1523 bp proximal
Tssr59244	transcription start site region 59244	1254 bp upstream