rs237896468 SNP Detail

Summary

• ID
  rs237896468
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96190461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCGCTC TCTCCGGCGC
  CGACGAGCCG CCCCCGTTCC ACCCCGAGCC GCGCAAGTCC GACTGCGCAC AGGACAAGAG
  CGTGTTCGGA GAGACCGAGG AGCAGAAGTG CTCCACGCCC GTCTACCCGT GGATGCAGCG
  CATGAATTCG TGCAACAGTG AGTGAGACTT CCCGCTGTCC CGTGTCTGTG TGTGTGTGTG
  K
  GTGGGGGGGG GTCGGCAAGC AGAAAGACTG AAAGTGTCAG CATCCCCCAA CCCCAATTCT
  CCCATTGGGA ACTAGGTGGG CATCTCAGCA GATAGAGCAA GATTGCCCCC CCCCCCGACC
  TCCAGATCAG TCCTCTTGCC CGCAGAAGTT GCAAAGTTTG CAAAGTCCCA GCTGCACAGT
  AAGGCAGGGG GAATAAGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss384366438	MGP_WTSI_11_96160949	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs237896468					SNP	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366438	MGP_WTSI_11_96160949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96190461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	within coordinates
Cpgi3642	CpG island 3642	912 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	454 bp distal
Rr455362	regulatory region 455362	869 bp proximal
Tssr3658	transcription start site region 3658	370 bp downstream
Tssr104480	transcription start site region 104480	865 bp downstream
Tssr104481	transcription start site region 104481	837 bp downstream
Tssr104482	transcription start site region 104482	814 bp downstream
Tssr104483	transcription start site region 104483	552 bp downstream
Tssr104484	transcription start site region 104484	533 bp downstream
Tssr104485	transcription start site region 104485	506 bp downstream
Tssr104486	transcription start site region 104486	487 bp downstream
Tssr104487	transcription start site region 104487	413 bp downstream
Tssr104488	transcription start site region 104488	383 bp downstream