rs237911697 SNP Detail

Summary

• ID
  rs237911697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67741330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTGAATT TCATCTAGCC AGGGAGGTAG TAAAGAAGAA
  AAAATGTAAA ACTATTTTAT TTTTAATATG TGTATGCACA TGAGGGCACA TGTGCGCGCG
  Y
  GCGCACACAC ACACACACAC ACACTCATGC ACGTGCCTGC ACCCAGAGGC CAGAAGAGGG
  CGACGAATTC CCAGGAGCTG AAGTCCCGGT TGTGAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377915458	MGP_WTSI_9_67681855	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237911697					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377915458	MGP_WTSI_9_67681855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67741330 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	1718 bp upstream
Rr681991	regulatory region 681991	1364 bp distal
Rr681992	regulatory region 681992	46 bp proximal
Tssr90357	transcription start site region 90357	1717 bp upstream