rs237924556 SNP Detail

Summary

• ID
  rs237924556
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAGATT TAGATTCCTG
  AGGCAGATAG AGTCTTCTCC AATTCTTGCT CAGAGAGGGG GTAAAGAGGG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGATCGATCT TGAGAACATC
  TTGATTCACA CTGAGTCTGT AGACAGGCAC CACAGGAAGG GGGCTTACTG TAGTTCCCCC
  M
  CCACCACCTC CTCTCCTCCC TGTACGTTTT GTTCCACTGA TGGCAATCAG CAGAAGTGAG
  AGCTCTGCTT AGAATCAAGC TGCTTGTGCT GGTTAGAGAA GAGTGTTGCC AAGCCGCAGA
  ATCACAGAGA AACACGGTGG TCATTTGGGA GACTAATCTG AGGGAGCAGG GACTGACTGC
  AGAAGAACAA GTCCTTCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss389995983	MGP_WTSI_13_113080365	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs237924556					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389995983	MGP_WTSI_13_113080365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426691 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm55074	predicted gene, 55074	964 bp upstream
Rr486330	regulatory region 486330	1327 bp distal
Rr486331	regulatory region 486331	525 bp distal
Tssr121099	transcription start site region 121099	1650 bp downstream
Tssr121100	transcription start site region 121100	1609 bp downstream
Tssr121101	transcription start site region 121101	1563 bp downstream
Tssr121102	transcription start site region 121102	1351 bp downstream
Tssr124046	transcription start site region 124046	1005 bp upstream