rs237926424 SNP Detail

Summary

• ID
  rs237926424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65755050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGGATA ATGAATATGT
  CTATGGATGA ATCCATTGAC TAGGCTAGAA CATTCCTTAT ACAATCACTT CCCAAAAGTA
  TTCAACACAT GAGTTTTGGC GAGACATTAC CAAGGACTAC ATTACAGTCC TTTTAACAGC
  TACTCTGCTT TCTACTCTGA TTTCTATTTT CTGTGATAAA ACATTCTGGC CAAAAGGAAC
  W
  TGGGGAGGAA AGGACTTTTT GGGGGAGAGG ACAGGGCAAG AGGCGTATGT TTCCCATCTT
  GGTCCATCAT TGAAAAATGT CAGGGCCAAG AGCTCAAGGC AGGAACTTGG AAGCAGGAGC
  CAGAACAAAA CACTGCTTGC TCCCTATGGC TTGCTCAGCT TGCCTTTTTA AAAGACAACC
  TAGGACCATG TGACCCAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809793	CHEV_6_65728060	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237926424					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65755050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	575 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	922 bp upstream
Tssr56854	transcription start site region 56854	928 bp upstream
Tssr61222	transcription start site region 61222	1570 bp downstream
Tssr61223	transcription start site region 61223	1623 bp downstream
Tssr61224	transcription start site region 61224	1631 bp downstream
Tssr61225	transcription start site region 61225	1648 bp downstream
Tssr61226	transcription start site region 61226	1707 bp downstream