rs237939030 SNP Detail

Summary

• ID
  rs237939030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84085290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGTGG CGAGAAGCAG
  AATCCTATAA CCTGGCTCAG CCCCGAAGCA TGACCTTTGG CCGGTCTGTG CCCAAATTGC
  TGACAGATCA TGGTTCCTCT CTTGTCTGGG TCCTAGAGAC GCACTAGGTC GGCTCCACAG
  CAGGCCAGGC TCCGCTCCGG ACTCGCGTGG CGCTCCCCGA GGCCTCCAGC TCCTAATGGC
  R
  GCGACACTGA GCGTGGAGCC CACGGGCCGC AGCTGCTGGG ACGAGCCGCT GAGCATCGCC
  GTGCGCGGCC TGGCCCCCGA GCAGCCCGTC ACGCTGCGCT CTGTCCTGCG CGACGAGAAG
  GGCGCGCTCT TCCGAGCCCA CGCGCGCTAC CGCGCGGACT CCCACGGCGA GCTGGACCTG
  GCGCGCGTGC CCGCGCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324114929	CHEV_12_85379466	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237939030					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84085290 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4732463B04Rik	RIKEN cDNA 4732463B04 gene			within coordinates
Acot4	acyl-CoA thioesterase 4			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm40474	predicted gene, 40474			within coordinates
Gm49366	predicted gene, 49366			Coding-Synonymous
Rr469550	regulatory region 469550			within coordinates
Tssr114309	transcription start site region 114309			137 bp downstream
Tssr114310	transcription start site region 114310			81 bp downstream