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rs237945935 SNP Detail
Summary
  • ID
    rs237945935
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:122341886 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATATAGTGT GAGAAATTCA
    GAAAAACAGA CATCTAAATT ATTTCAGCAG AAAAGTGTGT GTGGGGGGGG GAGAATTTTC
    GATTTTAACT GTGGCAAATC ATACATAATA AAATTTATCA TCTTAACCAT TTTGAGTATA
    AAGGTCAGCG TATATTGAAT TGTTCATTGC TCATCTGACC GTTTTCGTCA TCCATATCCA
    Y
    GGTTAACAAA AAAAACAAAA CAAAAATCAA ACCAAACCAA AGAAGCCCTT TTCGCTGGGC
    AGTGGTGGCG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGTG GATTACTGAG
    TTCGAGGCCA TCCTGGTCTA CAGCGTGAGT TCCAGGACAG CCAGGTTTCT CTACCCTGTT
    GGAAAAAAAA ACAAACAAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392814860 MGP_WTSI_14_122503696 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T C T T T T T T T T T T T T T C T T T T T T T T T C T T T T T T T T T T T T T T C T T T C T T T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237945935 SNP T T T T T C T T T T T T T T T T T T T C T T T T T T T T T C T T T T T T T T T T T T T T C T T T C T T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392814860 MGP_WTSI_14_122503696 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122341886 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene within coordinates
Cpgi6887 CpG island 6887 429 bp proximal
Gm56752 predicted gene, 56752 453 bp upstream
Rr296792 regulatory region 296792 within coordinates
Rr404313 regulatory region 404313 316 bp upstream
Tssr127313 transcription start site region 127313 527 bp upstream
Tssr127314 transcription start site region 127314 649 bp upstream
Tssr130316 transcription start site region 130316 1360 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory