rs237956365 SNP Detail

Summary

• ID
  rs237956365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164285036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAATGTG TGAGGACTGC
  AGTGTGGATG CATTTCTTCT CCCCGTTCCT ATCCATTCTA GATACATTTC TAGACTGGAA
  GAATGATGCT ATCTATCGCA GCATCGTCTG CATTAGAACA GGTACGCTCG TGAGTTCTGC
  TCACGGCCCC AAATCTCGTT TTTCTAAGGT CTTGGGAGAT GGAAAGGGAG GGTACATACA
  Y
  AGGCTCCTGG AACCTGACCG AATTTCCCAG GAGGAAAGGC TTAGGAAACG AAGATCCCTA
  CCATACCCAA AACCCTAGCT CCAGCTCCCC ACCCGAGGCG CATCCTGGGG ACCCCCCACA
  TTTGTCACTG GATGCCAAGC CCAGGGCCGC ACGCTCCTAG CAGCTCCTAC CACCCACTCC
  CTAACACCCT GGTCAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216948	MGP_WTSI_1_166387598	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237956365					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216948	MGP_WTSI_1_166387598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164285036 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	Intron
Cpgi945	CpG island 945	11 bp proximal
Gm32391	predicted gene, 32391	1056 bp upstream
Gm70492	predicted gene, 70492	1006 bp downstream
Rr422210	regulatory region 422210	858 bp distal
Rr422211	regulatory region 422211	1237 bp distal
Rr422212	regulatory region 422212	143 bp proximal
Rr422213	regulatory region 422213	644 bp proximal
Rr422214	regulatory region 422214	772 bp proximal
Rr422215	regulatory region 422215	878 bp proximal
Rr422216	regulatory region 422216	936 bp proximal
Rr422217	regulatory region 422217	1049 bp proximal
Rr422218	regulatory region 422218	1269 bp proximal
Tssr9788	transcription start site region 9788	1050 bp upstream
Tssr9789	transcription start site region 9789	1069 bp upstream
Tssr14746	transcription start site region 14746	527 bp downstream
Tssr14747	transcription start site region 14747	878 bp downstream
Tssr14748	transcription start site region 14748	1258 bp downstream