rs237959988 SNP Detail

Summary

• ID
  rs237959988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29228133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAATA AAGGAAAAAA
  CAAAAAAAAC AATAGATGTA AGATCTGAAT AACAGCATCC GTCACGTATA TAAGGGGACG
  TGGGTGTTGT GAATGCTTCA TTTCGGTTGA CAAACCTGGG GCTAAGAGAA AAAATAAGAA
  GCCCTATACA GAATGACCCC AGTTATTTCT TTGTCTTCTT ATTTAGCCCC TTTCCTTTTA
  Y
  TGTCTTCCAT TGAGGGTTCT TTCTTGGTCC TTAAAACACA TTCCCTTTTC AGAATCCTTT
  TCATTGTTAG CTTCTTTCTT GAAACCAGAT AGTTCCAGGA CTGGATCGTT CTCATCCTTC
  ACATTTCTGC TCAAATGCCA CTCTAAGAGG TCTTTTCTGG TCATCTCAAA ATAACATCTC
  CACTCACCTT TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211681	MGP_WTSI_19_29325223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237959988					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211681	MGP_WTSI_19_29325223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29228133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	262 bp proximal
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	within coordinates
Jak2	Janus kinase 2	1095 bp upstream
Rr546087	regulatory region 546087	within coordinates
Rr546088	regulatory region 546088	595 bp proximal
Rr546089	regulatory region 546089	869 bp proximal
Rr546090	regulatory region 546090	1218 bp proximal
Rr546091	regulatory region 546091	1719 bp proximal
Tssr155779	transcription start site region 155779	95 bp downstream
Tssr155780	transcription start site region 155780	848 bp upstream
Tssr155781	transcription start site region 155781	1015 bp upstream
Tssr155782	transcription start site region 155782	1127 bp upstream
Tssr155783	transcription start site region 155783	1159 bp upstream
Tssr155784	transcription start site region 155784	1567 bp upstream
Tssr155785	transcription start site region 155785	1696 bp upstream
Tssr155786	transcription start site region 155786	1721 bp upstream
Tssr155787	transcription start site region 155787	1821 bp upstream
Tssr158749	transcription start site region 158749	1361 bp downstream