rs237961417 SNP Detail

Summary

• ID
  rs237961417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85434458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCAAAG TCTCGAGAGC
  AGGACGCCTA CCTAGCGCAG GTGGAGGCTG CCTTGTCCTC CTCGCTCAGC TCCGGGGGCC
  CTTTCTGCTC CACTCTCAGC CGGCCCCTGG AGGGCTGTGT GCAGCAAGGG CAGGGGCAGG
  GCAGAGGGGC GGAGCAAGGG CACCTGCATG CAGGGCTGGG GTGCGGGGCG ACCTGGGGCC
  R
  ACTCCCTTCA CTAGGGGCGT GGCAGAGGGC AGCAGCCCTT GCGTCCTGCG GGCGTGGAAG
  AAGGTGCCTA TGCTGGGCTG GGCGTCCAGT CCAGAGCATT CTGACTTTCC TGTGTGCTGT
  ACAGAGGGTG TCCAGCCCGA GAACTGCCCG GGCGGTTCAA AATGGGGTGG CAGAACACCC
  TCTATTCTGG ACTCAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404575	MGP_WTSI_8_87231728	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237961417					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404575	MGP_WTSI_8_87231728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85434458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20709	CpG island 20709	1879 bp distal
Cpgi20710	CpG island 20710	626 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1143 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	942 bp proximal
Tssr78440	transcription start site region 78440	796 bp upstream
Tssr82122	transcription start site region 82122	1769 bp upstream
Tssr82123	transcription start site region 82123	1620 bp upstream
Tssr82124	transcription start site region 82124	1575 bp upstream
Tssr82125	transcription start site region 82125	1501 bp upstream
Tssr82126	transcription start site region 82126	1313 bp upstream
Tssr82127	transcription start site region 82127	676 bp downstream