rs237965849 SNP Detail

Summary

• ID
  rs237965849
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109514043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCCACA CAGTGTCTCT
  GCACAGATGG CAAAATATTT CCCTGGAATC TTAATTTACC AGGTCTATAT ACAGATCTGG
  GGGTTGGGAG AAAAGGGGGG TTCTTTTGAG GCACCGCTGA AGATTGAAAA AAAGAAAAAG
  AAAGAAGAAA GAAAAAAGAG AAAACCCACA AAAAACAAAA CAAAAAAACC AACCAACCAA
  C
  CAAACAAACA AAAAACCCCC ATAATCCTAG GTGTTCTGCA CACCCCAGCC CTGAAGGTCA
  CCGCTCAGGC TGGGGTCTTT TTGAATGAAG AAGGTGTATT TTCGGTTCCG GATGTCTAGT
  ATACTACGGA GGAAAAGCAA AACCTTGGGG CAGTTTTGTG AACAGTCCAA GACGGTAAAA
  AGCCAGAGAA GAATTTGTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254443	CHEV_4_109329451	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237965849					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109514043 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Cpgi14575	CpG island 14575	182 bp proximal
Gm12811	predicted gene 12811	13 bp downstream
Rr597349	regulatory region 597349	within coordinates
Rr597350	regulatory region 597350	564 bp proximal
Tssr42773	transcription start site region 42773	306 bp upstream
Tssr42774	transcription start site region 42774	973 bp downstream