rs237972987 SNP Detail

Summary

• ID
  rs237972987
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55793050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTAGCCT AGTAACAAGA
  TCTTTTTCCC AAACAACCAT TAGCTTGTGT AAAAAAATTA GTACATGGAA TGTAGGCCTT
  TGCAAGGACA CAAGTTTAAA GTTTAGCTTT TCTTAGGAAA GTCTGATTAA AGGGAAAAAA
  AAAAACCAAA AGACCAGTAA CAGTTCCTGG GTTTTCTCTC TCTCTCTTTT TTTTTTTTTT
  G
  TTTGTTTGGG TTTTTCGAGA CAGGGTTTCT CCGTATATTA GAGCTCACTG TCCTGGAACT
  CACTTTGTAG ACCAGGCTGG CTCGGGACTC AGAAATCCAC CTGCCTCTGC CTCCCAGTGC
  GCCACCACGC CTGGCTGTAA CAGTTCCTGT TACCTGCAAA TGCTTAGATG GATCTTAATT
  GTATTGGCAA CATTCTTTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss396395716	MGP_WTSI_16_55972800	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs237972987					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396395716	MGP_WTSI_16_55972800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55793050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	704 bp proximal
Gm28037	predicted gene, 28037	within coordinates
Rpl24	ribosomal protein L24	1252 bp downstream
Rr404882	regulatory region 404882	873 bp upstream
Rr517154	regulatory region 517154	88 bp distal
Rr517155	regulatory region 517155	61 bp proximal
Rr517156	regulatory region 517156	390 bp proximal
Rr517157	regulatory region 517157	1036 bp proximal
Rr517158	regulatory region 517158	1251 bp proximal
Rr517159	regulatory region 517159	1920 bp proximal
Tssr138799	transcription start site region 138799	1099 bp upstream
Tssr138800	transcription start site region 138800	1124 bp upstream
Tssr138801	transcription start site region 138801	1150 bp upstream
Tssr138802	transcription start site region 138802	1194 bp upstream
Tssr141546	transcription start site region 141546	1826 bp downstream
Tssr141547	transcription start site region 141547	1854 bp downstream
Zbtb11	zinc finger and BTB domain containing 11	1196 bp upstream
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	581 bp downstream