rs237978529 SNP Detail

Summary

• ID
  rs237978529
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:105278059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAAAA TTCCTCCCCC
  ACCCCATCAA AAACCCCCCA GCAAGTACCT GGGATTCCTG GACTGCCTCT CCATGCAAAT
  GCAACAATCA AAGCAATTTA AACCCTAGCC AATGATTTTC ATTTGCTCTG AAACTCATTC
  TAATTCTCCA AGGTCCATAT ATAACCCCTG GTTCACCCTG AATAAAGTGT ATGCTTTCCA
  S
  CCCATCCCCA ACTCCAAATA AAGCCATGTG TACAAGCTAA AATTGCCTAA GAAGTATTCC
  ATCAAAGACC ATCAGAGAAG GCCTTCATCT AAAAGAGCTC TAACACTAAG ATCCTTGGAG
  AAGGCCTTCT CTTCCCATGC CCTCACTCCC AGCCAGACCA GGATCCTACA GAACTCCACC
  CACTCTGAAC TCCCCTTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134815	MGP_WTSI_5_105559212	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237978529					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134815	MGP_WTSI_5_105559212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105278059 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	Intron
Tssr1571	transcription start site region 1571	1579 bp downstream
Tssr52267	transcription start site region 52267	1134 bp downstream
Tssr52268	transcription start site region 52268	1179 bp downstream
Tssr52269	transcription start site region 52269	1241 bp downstream
Tssr52270	transcription start site region 52270	1422 bp downstream
Tssr52271	transcription start site region 52271	1545 bp downstream
Tssr52272	transcription start site region 52272	1604 bp downstream
Tssr52273	transcription start site region 52273	1674 bp downstream
Tssr52274	transcription start site region 52274	1702 bp downstream
Tssr52275	transcription start site region 52275	1722 bp downstream
Tssr52276	transcription start site region 52276	1751 bp downstream
Tssr52277	transcription start site region 52277	1781 bp downstream
Tssr52278	transcription start site region 52278	1803 bp downstream
Tssr52279	transcription start site region 52279	1869 bp downstream
Tssr52280	transcription start site region 52280	1918 bp downstream
Tssr52281	transcription start site region 52281	1948 bp downstream
Tssr52282	transcription start site region 52282	1978 bp downstream