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rs237988292 SNP Detail
Summary
  • ID
    rs237988292
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19429055 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACACAGCTCA AGCCCTAGCC
TGCCCCTGTT AGTGGGAGCC CTGCTGAGTC CCTGAGAACT GAGGGGGTGG GAGGAGAAGC
CAGCCAGGGG CTCTCCAGCT TCCACCATGA CCCCTTTGAG TACCAGGACA TGGGGAGAAT
GGTTTTGTGT CCCCAGCCTG AACTCACTCT CCATACACTT GCTGGGAAAG TCAAAAGGCA
Y
GCAGCACAGG CAGGGGAGAA AGAATGGGGC TAAGGCCCCA TGACCCAGAG GGAGCAAAGA
TCCAGCTAAC TTCAGAGCAA GGGAGAAAGG CTGAGGTTCC AAAAGCCACG TAGAAACCGT
AGAAACCGCC AACCAAAGGC CCAGAGCAAA AGAAACCGCG GGAGGGTGAG ATAACAGAGG
ATCAGGAAAA CAGGAAGCCA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754773 MGP_WTSI_7_20280479 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237988292 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754773 MGP_WTSI_7_20280479 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429055 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 979 bp downstream
Cpgi18507 CpG island 18507 1391 bp proximal
Gm71725 predicted gene, 71725 1988 bp upstream
Rr155346 regulatory region 155346 946 bp proximal
Rr167192 regulatory region 167192 1854 bp distal
Rr167193 regulatory region 167193 1454 bp distal
Rr167194 regulatory region 167194 1345 bp proximal
Tssr2112 transcription start site region 2112 1321 bp upstream
Tssr2113 transcription start site region 2113 1346 bp upstream
Tssr2114 transcription start site region 2114 1461 bp upstream
Tssr2115 transcription start site region 2115 1497 bp upstream
Tssr2116 transcription start site region 2116 1572 bp upstream
Tssr2117 transcription start site region 2117 1594 bp upstream
Tssr2118 transcription start site region 2118 1701 bp upstream
Tssr2119 transcription start site region 2119 1710 bp downstream
Tssr2120 transcription start site region 2120 1773 bp upstream
Tssr2121 transcription start site region 2121 1805 bp upstream
Tssr64880 transcription start site region 64880 1138 bp upstream
Tssr64881 transcription start site region 64881 1190 bp upstream
Tssr64882 transcription start site region 64882 1234 bp upstream
Tssr64883 transcription start site region 64883 1272 bp upstream
Tssr64884 transcription start site region 64884 1299 bp upstream
Tssr64885 transcription start site region 64885 1378 bp upstream
Tssr64886 transcription start site region 64886 1399 bp upstream
Tssr64887 transcription start site region 64887 1431 bp upstream
Tssr64888 transcription start site region 64888 1650 bp upstream
Tssr64889 transcription start site region 64889 1744 bp upstream
Tssr64890 transcription start site region 64890 1790 bp upstream
Tssr64891 transcription start site region 64891 1813 bp upstream
Tssr64892 transcription start site region 64892 1846 bp upstream
Tssr64893 transcription start site region 64893 1881 bp upstream
Tssr70973 transcription start site region 70973 1162 bp downstream
Tssr70974 transcription start site region 70974 1208 bp downstream
Tssr70975 transcription start site region 70975 1236 bp downstream
Tssr70976 transcription start site region 70976 1271 bp downstream
Tssr70977 transcription start site region 70977 1319 bp downstream
Tssr70978 transcription start site region 70978 1334 bp downstream
Tssr70979 transcription start site region 70979 1358 bp downstream
Tssr70980 transcription start site region 70980 1368 bp downstream
Tssr70981 transcription start site region 70981 1389 bp downstream
Tssr70982 transcription start site region 70982 1403 bp downstream
Tssr70983 transcription start site region 70983 1436 bp downstream
Tssr70984 transcription start site region 70984 1453 bp downstream
Tssr70985 transcription start site region 70985 1518 bp downstream
Tssr70986 transcription start site region 70986 1551 bp downstream
Tssr70987 transcription start site region 70987 1581 bp downstream
Tssr70988 transcription start site region 70988 1625 bp downstream
Tssr70989 transcription start site region 70989 1664 bp downstream
Tssr70990 transcription start site region 70990 1676 bp downstream
Tssr70991 transcription start site region 70991 1721 bp downstream
Tssr70992 transcription start site region 70992 1729 bp downstream
Tssr70993 transcription start site region 70993 1738 bp downstream
Tssr70994 transcription start site region 70994 1779 bp downstream
Tssr70995 transcription start site region 70995 1784 bp downstream
Tssr70996 transcription start site region 70996 1817 bp downstream
Tssr70997 transcription start site region 70997 1851 bp downstream
Tssr70998 transcription start site region 70998 1913 bp downstream
Tssr70999 transcription start site region 70999 1931 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory