rs237989562 SNP Detail

Summary

• ID
  rs237989562
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3398262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACCCCC CTCCCCCACC
  CATAAAATTA TTCCCTTGCT ACTTCATAAC TGTAACTGTG TGACTGTTAT GAATTATAAA
  GTAAATATCT GTGTTTTCTG ATGGTCTTAG GCATCCCCTG TCAAGACTCA CAGGTTGAGA
  ACTTCTGCTC TAATGCCTAT GTTCAGACTT AAAAGCTCTT CCTTGAATCA ATCCCCTAAA
  M
  CCACAGAAGA GGCCACTTTG GAGACTGTAT AAGCCACTGT ATTAATGGTT TCTTCAGGCT
  ATCCGTGCTT CTAAAAGGCT TGCACAAACC TTAAAATGTG CTGCAGAATC ACACATATAT
  AAAAATCCCT TAGGAAAAGA AAACCAGAGG AAGGCTAATT AGAACTAAAA ATAAGTGGGG
  TGTGTGTGTG ACTGTGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367209154	MGP_WTSI_6_3348262	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237989562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367209154	MGP_WTSI_6_3348262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3398262 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	1339 bp proximal
Rr146111	regulatory region 146111	1861 bp distal
Rr146113	regulatory region 146113	within coordinates
Rr146114	regulatory region 146114	1538 bp proximal
Rr378834	regulatory region 378834	703 bp downstream
Rr399551	regulatory region 399551	1131 bp upstream
Samd9l	sterile alpha motif domain containing 9-like	within coordinates
Tssr59689	transcription start site region 59689	1039 bp downstream
Tssr59690	transcription start site region 59690	1189 bp downstream
Tssr59691	transcription start site region 59691	1283 bp downstream