rs238000627 SNP Detail

Summary

• ID
  rs238000627
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44379255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGATGAC CTTGAACTTC
  TGAGTCTCTC CTTTCACGTG GGTGCTGTGA TTACTGACGT GTGCCACCAC GCTCAGCCTG
  TGTGATGCTG GGGACTGAAC CTAGGGGTTT GTGCATGCAA GGCAAGCACT TGGCCAACTG
  AGCCAGGTAT GTCTCCAGCT CTACTTGGGT TTTTTTTTTT TTAAGATTTA TTTATTATAA
  M
  TTAAGTACAC TGTAACACTG TAGCTGACCT CAGACACGCC AGAAGAGGGC ATCAGATTTC
  ATTAAGGGCG GTTGTGAGCC ACCATGTGGT TGCTGGGATT TGAACTCGGG ACCTCTGGAA
  GAGCAGTCAG TGCTCTTAAC CGCTGAGTCA TCTCTCCAGC CCCTCTAGCT TTGTTTTTAA
  GCTAAGCATG AGATGGCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100964	CHEV_4_44392127	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238000627					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44379255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	1300 bp proximal
Gm68903	predicted gene, 68903	within coordinates