rs238000846 SNP Detail

Summary

• ID
  rs238000846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74544587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACCAAA GGCACGACAA
  AAATTACACT CCCTTTCAGC GAGTAATGTC TAAGAGGAGT AGGAAAGTAA AGAATGGTCA
  AGCGGGCGTG TGAATATCGC AGTCAAGGTT TTAATGGATA TGTGGCAACA AAGTCACCTG
  TAAAGACAGC AGGCCTTGCA GGGAGGTACG CTGAGACCAC CTGAACCTTG GTGAAGAGAG
  R
  CCAGATTTAG AATGCAGAAA GCAAGTGACA ACACGGACGC GTTAAAGGAG AAGTAAAGGG
  GGCAACACTC GAACGGGGCA CCTGTAAGGC ATTGGGTATC CAAGGACCCG GGGCGGGCTA
  AGCAGCAGCC GGGAGAACTC TGAAGTGGAC GCCGAGTGGG CGGACCGCAG GGGTGGGGTG
  GGGGTGCCGG GGAAAACGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350125609	MGP_WTSI_1_74552002	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238000846					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350125609	MGP_WTSI_1_74552002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74544587 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	630 bp upstream
Cpgi385	CpG island 385	within coordinates
Rr396106	regulatory region 396106	347 bp upstream
Rr413210	regulatory region 413210	within coordinates
Rr413211	regulatory region 413211	365 bp proximal
Rr413212	regulatory region 413212	641 bp proximal
Rr413213	regulatory region 413213	1216 bp proximal
Tssr7425	transcription start site region 7425	595 bp upstream
Tssr7426	transcription start site region 7426	616 bp upstream
Tssr7427	transcription start site region 7427	683 bp upstream
Tssr7428	transcription start site region 7428	881 bp upstream
Tssr7429	transcription start site region 7429	950 bp upstream
Tssr7430	transcription start site region 7430	1274 bp upstream
Tssr12315	transcription start site region 12315	252 bp downstream
Tssr12316	transcription start site region 12316	359 bp downstream
Usp37	ubiquitin specific peptidase 37	within coordinates