rs238001904 SNP Detail

Summary

• ID
  rs238001904
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGTGCG TGTCTGGAAT
  AACGGAGTGT GACACAGCTG TCAACTGTCC CTGGGCCTGT CATTCTTGGG GATCCAGGTG
  ATGCTCGCCC TTTCCCTGGC AGGTGAGCCG CCGAGCGGAG AGCCCTCACC GCAGCAGTCA
  GCGTTGTCCC GACACTACGG TCCCAGTACA AGCCTCAACC CACGATCGCT CCCGGTGTCC
  S
  GTGCCCCGTG CATGTGTCAC GGAGGAGACG GCGGGATGCC GTGTCCACAC TCGGATTCCG
  GTCCGGGAAC AGTGGTATCC CGATGTCCCT GAGCCCGCAG TCGCCAGGAC TCACCCCGGT
  GGTAGTAAGC GCTTTGCTCC GACTTGTGTC CCCTGACGGA CGCCGTCCGG TTCCCGGAGC
  CGCCACAGGC AGAGGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387758776	MGP_WTSI_13_12553579	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	C	G	G	G	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238001904					SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	C	G	G	G	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387758776	MGP_WTSI_13_12553579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	576 bp downstream
Rr369647	regulatory region 369647	54 bp downstream
Tssr118345	transcription start site region 118345	615 bp downstream
Tssr121453	transcription start site region 121453	199 bp upstream
Tssr121454	transcription start site region 121454	98 bp downstream
Tssr121455	transcription start site region 121455	120 bp downstream
Tssr121456	transcription start site region 121456	226 bp downstream
Tssr121457	transcription start site region 121457	250 bp downstream