rs238002206 SNP Detail

Summary

• ID
  rs238002206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26497376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGTGCT GGGAATGTGT
  CAAGCAGCCA GTGCCAGACA ACTCTGTGTC CCAGCCTGAG GACAGCTGAG AGCCCTCATG
  GGTATTTGCT GGGAGGCAGC CAGCCAGCAT ATGACACCAG GTGGCATTGT CAGAGCTGAG
  CTGCCTTCCT TCCTAAAGTT CTGGGCCCAG AAGGGGGGCC TTTGCTGGCA AGGGGATGCC
  Y
  GGGAGCCGGG TGTGGGGAAT GTTTGCACAG GGAGTAGACA GGGAACCAGA GGTTGAGCCC
  AGCCCATCTG TCCCCTTTCC CTACAGAATA CTCCCCAGGA CCTGGTGAGG CACTTTCTTC
  TTTGCATTTC TTCTGGGGAA TAGGGGGAGG AAAGTGATAT AAGGATGAAG AGCTCTGTAC
  TTCCTGGAAG CTGAGGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433525	MGP_WTSI_2_26462884	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238002206					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433525	MGP_WTSI_2_26462884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26497376 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	within coordinates
Rr42175	regulatory region 42175	1576 bp distal
Rr42176	regulatory region 42176	within coordinates
Rr48585	regulatory region 48585	1625 bp proximal
Tssr23142	transcription start site region 23142	450 bp downstream
Tssr23143	transcription start site region 23143	621 bp downstream
Tssr23144	transcription start site region 23144	702 bp downstream
Tssr23145	transcription start site region 23145	788 bp downstream
Tssr23146	transcription start site region 23146	808 bp downstream
Tssr23147	transcription start site region 23147	890 bp downstream
Tssr23148	transcription start site region 23148	1255 bp downstream
Tssr23149	transcription start site region 23149	1306 bp downstream