About   Help   FAQ
rs238002904 SNP Detail
Summary
  • ID
    rs238002904
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130357 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCTTTTCT TCTTCCACCA
GATCTCTCCT TCACTCCTAC CCATCTTTTA TTCTTCCTTT TTCTCTTCTT CTCCATCGTT
AATTCAACTC TTCTTTCCCT TCTGTTCCTC AATTCTCCTC CTCCCTGCTT CTTCATTTCT
TTGAATACTA TCCATCTTCA TCCCTCTTTC TCTTCATTCC TCTCTTCTAC CCTTTCTTTT
Y
CTTCTGTTCC TCCACATGCA TCCCTGTGGT TTTCCACACA TTCTCTCTCC TCTCTTTCCC
CTTCACCCTC TACCTCCTCC TCTGTCTTTC CTTGTCCTTT GGTTTCCTCT ACAGTGTCTC
ATCCAATATC TCCTGCTGTT CTTCCTTCTC TCTGGCATTT ACACTGTTTC TGCTTCTGTT
TCTCCTAATT ATTTCTACTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156149 MGP_WTSI_7_51736303 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238002904 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156149 MGP_WTSI_7_51736303 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130357 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1651 bp proximal
Tssr2227 transcription start site region 2227 1913 bp downstream
Tssr2228 transcription start site region 2228 850 bp downstream
Tssr2229 transcription start site region 2229 575 bp downstream
Tssr2230 transcription start site region 2230 392 bp downstream
Tssr2231 transcription start site region 2231 265 bp downstream
Tssr2232 transcription start site region 2232 91 bp downstream
Tssr2233 transcription start site region 2233 46 bp downstream
Tssr2234 transcription start site region 2234 100 bp upstream
Tssr2235 transcription start site region 2235 734 bp upstream
Tssr66293 transcription start site region 66293 1987 bp downstream
Tssr66294 transcription start site region 66294 1963 bp downstream
Tssr66295 transcription start site region 66295 1698 bp downstream
Tssr66296 transcription start site region 66296 1527 bp downstream
Tssr66297 transcription start site region 66297 1503 bp downstream
Tssr66298 transcription start site region 66298 1448 bp downstream
Tssr66299 transcription start site region 66299 1428 bp downstream
Tssr66300 transcription start site region 66300 1405 bp downstream
Tssr66301 transcription start site region 66301 1389 bp downstream
Tssr66302 transcription start site region 66302 1348 bp downstream
Tssr66303 transcription start site region 66303 1339 bp downstream
Tssr66304 transcription start site region 66304 1334 bp downstream
Tssr66305 transcription start site region 66305 1295 bp downstream
Tssr66306 transcription start site region 66306 1241 bp downstream
Tssr66307 transcription start site region 66307 1192 bp downstream
Tssr66308 transcription start site region 66308 1175 bp downstream
Tssr66309 transcription start site region 66309 1125 bp downstream
Tssr66310 transcription start site region 66310 1056 bp downstream
Tssr66311 transcription start site region 66311 1033 bp downstream
Tssr66312 transcription start site region 66312 1014 bp downstream
Tssr66313 transcription start site region 66313 1004 bp downstream
Tssr66314 transcription start site region 66314 986 bp downstream
Tssr66315 transcription start site region 66315 979 bp downstream
Tssr66316 transcription start site region 66316 914 bp downstream
Tssr66317 transcription start site region 66317 898 bp downstream
Tssr66318 transcription start site region 66318 857 bp downstream
Tssr66319 transcription start site region 66319 829 bp downstream
Tssr66320 transcription start site region 66320 805 bp downstream
Tssr66321 transcription start site region 66321 781 bp downstream
Tssr66322 transcription start site region 66322 765 bp downstream
Tssr66323 transcription start site region 66323 727 bp downstream
Tssr66324 transcription start site region 66324 674 bp downstream
Tssr66325 transcription start site region 66325 633 bp downstream
Tssr66326 transcription start site region 66326 623 bp downstream
Tssr66327 transcription start site region 66327 603 bp downstream
Tssr66328 transcription start site region 66328 585 bp downstream
Tssr66329 transcription start site region 66329 546 bp downstream
Tssr66330 transcription start site region 66330 533 bp downstream
Tssr66331 transcription start site region 66331 519 bp downstream
Tssr66332 transcription start site region 66332 486 bp downstream
Tssr66333 transcription start site region 66333 451 bp downstream
Tssr66334 transcription start site region 66334 445 bp downstream
Tssr66335 transcription start site region 66335 434 bp downstream
Tssr66336 transcription start site region 66336 420 bp downstream
Tssr66337 transcription start site region 66337 404 bp downstream
Tssr66338 transcription start site region 66338 320 bp downstream
Tssr66339 transcription start site region 66339 288 bp downstream
Tssr66340 transcription start site region 66340 221 bp downstream
Tssr66341 transcription start site region 66341 172 bp downstream
Tssr66342 transcription start site region 66342 143 bp downstream
Tssr66343 transcription start site region 66343 117 bp downstream
Tssr66344 transcription start site region 66344 23 bp upstream
Tssr66345 transcription start site region 66345 56 bp upstream
Tssr66346 transcription start site region 66346 112 bp upstream
Tssr66347 transcription start site region 66347 150 bp upstream
Tssr66348 transcription start site region 66348 191 bp upstream
Tssr66349 transcription start site region 66349 215 bp upstream
Tssr66350 transcription start site region 66350 243 bp upstream
Tssr66351 transcription start site region 66351 251 bp upstream
Tssr66352 transcription start site region 66352 287 bp upstream
Tssr66353 transcription start site region 66353 361 bp upstream
Tssr66354 transcription start site region 66354 375 bp upstream
Tssr66355 transcription start site region 66355 402 bp upstream
Tssr66356 transcription start site region 66356 419 bp upstream
Tssr66357 transcription start site region 66357 433 bp upstream
Tssr66358 transcription start site region 66358 445 bp upstream
Tssr66359 transcription start site region 66359 471 bp upstream
Tssr66360 transcription start site region 66360 483 bp upstream
Tssr66361 transcription start site region 66361 509 bp upstream
Tssr66362 transcription start site region 66362 541 bp upstream
Tssr66363 transcription start site region 66363 558 bp upstream
Tssr66364 transcription start site region 66364 591 bp upstream
Tssr66365 transcription start site region 66365 611 bp upstream
Tssr66366 transcription start site region 66366 631 bp upstream
Tssr66367 transcription start site region 66367 659 bp upstream
Tssr66368 transcription start site region 66368 681 bp upstream
Tssr66369 transcription start site region 66369 715 bp upstream
Tssr66370 transcription start site region 66370 757 bp upstream
Tssr66371 transcription start site region 66371 1182 bp upstream
Tssr66372 transcription start site region 66372 1345 bp upstream
Tssr66373 transcription start site region 66373 1635 bp upstream
Tssr66374 transcription start site region 66374 1693 bp upstream
Tssr66375 transcription start site region 66375 1704 bp upstream
Tssr66376 transcription start site region 66376 1717 bp upstream
Tssr66377 transcription start site region 66377 1756 bp upstream
Tssr66378 transcription start site region 66378 1778 bp upstream
Tssr66379 transcription start site region 66379 1790 bp upstream
Tssr66380 transcription start site region 66380 1823 bp upstream
Tssr66381 transcription start site region 66381 1842 bp upstream
Tssr66382 transcription start site region 66382 1866 bp upstream
Tssr66383 transcription start site region 66383 1976 bp upstream
Tssr72201 transcription start site region 72201 1982 bp upstream
Tssr72202 transcription start site region 72202 1125 bp upstream
Tssr72203 transcription start site region 72203 745 bp upstream
Tssr72204 transcription start site region 72204 145 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory