rs238006528 SNP Detail

Summary

• ID
  rs238006528
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95393658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACGAGTA AGAGCCAAAG
  TAAAGAAGGG AGGACGAGGG GGGAAGAAAC AGGCATCTAA GACCGGGAAC CTTCCCGCCT
  CTCCCAGCCT CTAGCCCGCA GCCTCCGAGA GCAGCAAGGG GTGATACAAG GACGCCGGAC
  CACCTCGGAA CCACTGCTCT GACCCACAAA GCCGAACGAG GTGACCAGCC CCGCTCGCCA
  S
  CAGGCACGCT GGTGTGGGGC TGAATCCCAG TCGGGACGGA CGCGCGCTCG GGCCTCTCAA
  CCTGCGCACC TTGGTGCAGC GGTGCCAGGC CCACTGTGGC CAACAGGCCT CAGCCCCTCG
  CCCCAGGAAA CCCTCGAAGG CCAGAGGCTT CTGTAGGCCC TCGACCACGG TGAGAGACCC
  CCCTGACTGA CGGAGATCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100834	CHEV_9_95412024	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238006528					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95393658 () rs orientation: forward

Symbol	Name	Function Class
Gm28424	predicted gene 28424	within coordinates
Rr383784	regulatory region 383784	within coordinates
Rr684802	regulatory region 684802	343 bp distal
Rr684803	regulatory region 684803	within coordinates
Rr684804	regulatory region 684804	270 bp proximal
Tssr86548	transcription start site region 86548	316 bp downstream
Tssr90919	transcription start site region 90919	252 bp downstream
Tssr90920	transcription start site region 90920	292 bp downstream
U2surp	U2 snRNP-associated SURP domain containing	Intron