rs238006837 SNP Detail

Summary

• ID
  rs238006837
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCAGTT CTGTGTATAA
  GCAGCAGGTA ACCTTGCCAA GTCCATAATG CTTGGAAGGG TGAGGTGAGA GCTGGAATCC
  CCATAGTTCC TGACCTCTTA GAGGTGTGGA TGCTATCATC GAGGGCCTCT AGTTACTTCA
  GGTGATATCT GAGACAGGAG AAGAAAGAGG AATTAACCAA CTCAAGCTAG TAGTTTGCAG
  M
  TAGGGGCTAG TTTTGTTCTC TGGGATGTTT GGCAATGTCT GTGGACATGT GTGCCTGCCA
  CAGTGAAGGG CGGCAATGGG GAAGGTGCCC GGGCAATGTG GGCAGAGGCT GAGGATGTTG
  CTAAACTTGC AGTGCACAGC AAAAGCATGC TTAGCAGGGA TGCGGCTGAG AGCCCTGATG
  ATAGACTCTC ATGCATTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195919	CHEV_9_111048821	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238006837					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975385 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	1278 bp distal
Tssr87483	transcription start site region 87483	378 bp upstream
Tssr87484	transcription start site region 87484	1716 bp upstream