rs238007856 SNP Detail

Summary

• ID
  rs238007856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45544341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTGACC CCTTGAAATA
  CTGTGTCTAC GAGACCTGTG GACCTGAGCT GTTTGGAAAG GCGCTTGTAA AGCTTAGCTG
  ACACTTGTAG CATGCTTCCT CAATGCGTTT GTGTTTTTGG AATCCAGATG GTTAAAACTG
  TCCAGATAAT ACGCTGCCAA ATCAGCTGTG CAGATGGTGC TGCGGGGCGG AGGGGGGGGG
  Y
  GGCGGGGGGA ATTCCAGCGA TTGGAATAAG AAATAAAACA CCCTGTGTGT TCTTCTACCT
  CAGCCTTTTG GGAAGTCTGT TTTGGGGGGA CCCCTTTCCC TGTGCCATTG GTCAGACCCT
  AGAAATAGTC AAGCAAGGCC AAGCCTCCAC TGGAGGGCTG CGTTTTGGCT TTGCTGTTTC
  CTTAAAACCT TGTTTTTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324332395	CHEV_13_45486234	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238007856					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45544341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	295 bp distal
Gm56579	predicted gene, 56579	946 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	1126 bp downstream
Rr478673	regulatory region 478673	1113 bp distal
Rr478674	regulatory region 478674	1332 bp distal
Rr478675	regulatory region 478675	within coordinates
Rr478676	regulatory region 478676	456 bp proximal
Rr478677	regulatory region 478677	957 bp proximal
Tssr119571	transcription start site region 119571	1115 bp downstream
Tssr119572	transcription start site region 119572	899 bp upstream
Tssr119573	transcription start site region 119573	915 bp upstream