rs238008833 SNP Detail

Summary

• ID
  rs238008833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTGTGT TACTGTTTTC
  CGCTTATCCA GCTAGCTCCC AAAGAAGTGA GACTGGACTA TTGCAATTTA TTAAACTTTA
  AGGGCAGAAC AACTGAGCAG TATTACTCTA TTTTAATCCT CTAAGCTACT CTGGCTACTT
  CCTAGCCCAC ATCCCTGAGA TGCTCGAATC TTATGGCTTT CTCTGCTCCA GCTGTTTTCT
  Y
  GTGGTCTCTC CTGGATTCTT TCCCTGTGAC TAATTCTCAT TTTTTTCTCT CTCCTGCCCC
  ATTTCCTGGA AGGAAGTCCT GCCCTATCCT CTCCCCTGAC CAGTTATTCA TCAGATTTTA
  TTGACAAATC GGGGAATAAT TCAGGAGCAA TGTTTTTACA ACATTGAGAC AGGAGATAGT
  TAGAATACAG ACTGCAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362698	CHEV_17_32794168	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238008833					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876197 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1677 bp upstream
Gm65897	predicted gene, 65897	205 bp downstream
Tssr143725	transcription start site region 143725	1655 bp upstream
Tssr143726	transcription start site region 143726	1743 bp upstream
Tssr143727	transcription start site region 143727	1766 bp upstream
Tssr143728	transcription start site region 143728	1786 bp upstream
Tssr143729	transcription start site region 143729	1798 bp upstream
Tssr143730	transcription start site region 143730	1821 bp upstream
Tssr143731	transcription start site region 143731	1843 bp upstream
Tssr143732	transcription start site region 143732	1857 bp upstream