rs238009709 SNP Detail

Summary

• ID
  rs238009709
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAGAA GCAATGAAGA
  GAAGTGGAGC GGGGCTGAGG CTCCAGAGCT CAGCTGGGTA TACCCTTCCC TGGGAGCTGC
  AGTGCCTCTT GCTGAGGAGG CTTCCTCTCA GAGCTATGTG GTTCCTGGGC TCCTGTGTCT
  CAGGACGCTC TTCTATTGGG ACACTGTCCT ACCTCTGAGC TGTGTGGTTC CTAGGCTACC
  A
  TGTCTACCAT TGGGACACTC TCTCTGCTAA GAGTTGTGCG GTTCTTGGGG TTCCACACCT
  TCCTAGAAGG AACATTTATA GCTTCTAATC TTAAAATAGA CTCAGGCTGG TCCATCACAT
  GGAGAAGTTC AAGGGAGATC AAATGGATAC CGGGCACCAT TTGACGGATT AGAAAAGCTA
  GGTCACCACT GGCCTGCAGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368223996	MGP_WTSI_6_48503770	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238009709					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368223996	MGP_WTSI_6_48503770	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	686 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	233 bp downstream
Lrrc61	leucine rich repeat containing 61	1027 bp upstream
Rr399635	regulatory region 399635	747 bp upstream
Tssr56137	transcription start site region 56137	1005 bp upstream
Tssr56138	transcription start site region 56138	1159 bp upstream
Tssr60734	transcription start site region 60734	886 bp downstream
Tssr60735	transcription start site region 60735	903 bp downstream
Tssr60736	transcription start site region 60736	946 bp downstream