rs238012342 SNP Detail

Summary

• ID
  rs238012342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6243008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGAGCA CAATTGCAGG
  GGAACAGTGG AGAATCTTAG AAATAAAGAA AACAGGGGCA TTATCACAGG CCTTGGAAGT
  GTGGACTTTG GATAGAATTG AAATGATCCA GTGTTCTGAG AGGCTCCAGG CAAGGCAGAG
  CTTCATCCAT CAGGTCTGGA TAACAGTGGG CTAAGGTACC ATGTCCTTGA GCATGACAAA
  R
  CACCCATGTG GAATGCTGTC CTGGGAAGAC TTTTTTTTCT GAACTCTTTT GAATTGAAGG
  CTGTTTTGCT GTTTCTATCC TTCAGACAAG AGTGGAAGGT GTTCTTTTTG ATATTTGGAA
  CCACGGTTTT GGGTAGTCCA TGATTTTAGA GAACAAAAAT TTTCAGTAAG AAGTAGAGAA
  TCGGGCTGGT GAGATGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399598577	MGP_WTSI_18_6243006	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238012342					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399598577	MGP_WTSI_18_6243006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6243008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	1294 bp distal
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	1484 bp upstream
Rr346583	regulatory region 346583	193 bp proximal
Rr349615	regulatory region 349615	393 bp proximal
Rr349616	regulatory region 349616	993 bp proximal
Rr353008	regulatory region 353008	407 bp distal
Tssr152353	transcription start site region 152353	1794 bp upstream
Tssr152354	transcription start site region 152354	1701 bp upstream
Tssr152355	transcription start site region 152355	1526 bp upstream
Tssr152356	transcription start site region 152356	1458 bp upstream