rs238013290 SNP Detail

Summary

• ID
  rs238013290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGGGT TTCCCTGTAT
  AGCCCTGGCT ATCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTCGAACT CAGAAATCTG
  CCTGCCTCTG CCTCCCAAGT GCCAGGATTA AAGGCGTGCG CCACCACGCC CGGCTGCTAT
  TTGCTTTTAA GCAGGTAAGG TAGCCTGACT CTGATTATGC TGCAGCTCCC GAAAGAGATG
  Y
  GAGATCATTC TTGAGTTCAA AGGAAAAGGC CATGTAGCCA GGCCTCGAAC TCAGCAGTTC
  TGGAGCCAGA GAGTGGATAG CAAGGCTTAT GCGCAACAAC TCATCAGGCG AGTGAGTGCA
  AGCTGCCACT GGCACTCTGT AGAGAAGGGA GAGGCTGACC TCAGAGTGAG TTGGGAATGA
  GAGTGGCCAA GGAAGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378907295	MGP_WTSI_9_110558329	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238013290					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378907295	MGP_WTSI_9_110558329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484893 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	678 bp upstream
Cpgi22385	CpG island 22385	1385 bp distal
Cpgi22386	CpG island 22386	502 bp proximal
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	1664 bp upstream
Rr401701	regulatory region 401701	1446 bp downstream
Rr401702	regulatory region 401702	501 bp upstream
Tssr87398	transcription start site region 87398	641 bp upstream
Tssr87399	transcription start site region 87399	669 bp upstream
Tssr91642	transcription start site region 91642	1820 bp upstream
Tssr91643	transcription start site region 91643	1744 bp upstream
Tssr91644	transcription start site region 91644	1613 bp upstream
Tssr91645	transcription start site region 91645	1571 bp upstream
Tssr91646	transcription start site region 91646	557 bp downstream