rs238013415 SNP Detail

Summary

• ID
  rs238013415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72026416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccgagagt ACACCGTGTG TGGCATGCAG
  TCACCCCACA AAATAAATAA ATGTCCCTTA GAGGTCTGCC TGATGGGGAT TGTTACAAGC
  TTGTCTAGAC AGTAGTTTTG GAATAGACTT TCTGATCCAA GTAGAAGTCT AGTGAAAGTA
  Y
  TTCTGGATGA TAGGAAATCG TATAATCTGT GTGATAGATA ACTTTAGGCG AGCCTGAAAA
  CCACCTCTAA CGGGCACCAC GCAAAGCACA AGTCCCTTCT CCTGTCCCTT GTCTTCCCAC
  ATTTTTCTTT TTTCCCCCCC TAGGTGAAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320341699	CHEV_2_72034129	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238013415					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72026416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			824 bp downstream
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			171 bp proximal
Rr558928	regulatory region 558928			964 bp proximal
Rr558929	regulatory region 558929			1139 bp proximal