rs238020664 SNP Detail

Summary

• ID
  rs238020664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185317920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCAGTT TTACTATCAG
  TCTACCCCTC TTTCTGGGCC TTCTGGGGCT GTGCATCCCT TAGAGACAGG AAAAGCTCAG
  GGTATTCATA TCGCTCTTTC CTGCTTCCCT TTCTTTTTCC AGTTAGTCAG CTTTCAGTGT
  TTAGAATGAG GGCGGGGAGG TGCTTGGAAT CCCTTTGTTC TTTCTTTCCC TGCTCACTAG
  R
  CCAAGGTCAC TCCAAACCAA AGATCTCTGG ACTAGAATTT ATTAGCTTAC GGAAACCCTG
  TCTTCCTTAT CACCTCCCAT GACACCTCCC ATGTCATTGT GCCAAAATGA CATGTCTGAA
  TCCACATGGA TTCGCTGTGT GGAGGATTTT CTTCAGGTTC CTGACTGCAT GGCCCACAGC
  TGTGGTTTCC TGATGTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320177534	CHEV_1_187409602	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238020664					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185317920 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	334 bp distal
Rr425415	regulatory region 425415	1923 bp proximal