rs238024108 SNP Detail

Summary

• ID
  rs238024108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTGGC TGGAAAATTC
  GCTAGGAGGT TAGGAGCACT TGTTATTCTT GCAAAGGATC CTGTTTCAAT TCCCAGCACC
  CACAAGGCGC CTCACCACTT CGTTAAGCTC CAGGCATGCA TATGGTGCAC AGACATGGAT
  GTAGGTAAAG CATTTATTCA CACAAAATGA AAAAAAAAAA AAAGAACTAA AAATGGATAA
  R
  TAGAAATAAG TGGGTTCCTT TAAAAAATAA CTTGGGGGGG GCTGGTGAGA TGGCTCAGTG
  GGTAAGAGCA CCCGACTGCT CTTCCAAAGG TCTGAAGTTC AAATCCCAGC AACCACATGG
  TGGCTCACAA CCATCTGTAA CAAGATCTGA CGCCCTCTTC TGGAGTGTCT GAAGACAGCT
  ACAGTGTACT TACATATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277626	CHEV_4_116301324	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238024108					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485916 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	32 bp downstream
Cpgi14636	CpG island 14636	1205 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	778 bp upstream
Rr84401	regulatory region 84401	85 bp proximal
Rr84402	regulatory region 84402	1085 bp proximal
Rr84403	regulatory region 84403	1485 bp proximal
Rr99808	regulatory region 99808	115 bp distal
Rr398403	regulatory region 398403	1719 bp downstream
Rr398404	regulatory region 398404	1024 bp downstream
Rr398405	regulatory region 398405	555 bp downstream
Tssr42894	transcription start site region 42894	1322 bp upstream
Tssr42895	transcription start site region 42895	1216 bp upstream
Tssr42896	transcription start site region 42896	811 bp upstream
Tssr42897	transcription start site region 42897	763 bp upstream
Tssr42898	transcription start site region 42898	731 bp upstream