rs238027661 SNP Detail

Summary

• ID
  rs238027661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTACTTC CTGGTTGTAC
  TCACTTCCTC AATCCAGGCT AAAAGGCTAC GTCATCCCGT CATCCTCTCT GCTGACGTCA
  CCACTTGCCC CACCCTGCCC CTCCCATCCA CATCACTGAC TCCTAATCCA AGTTCAGCTT
  TAGGTGAGAA GAGCCAGGGA GCCACACTTT CTCTCCCCCA GGCTGCTTCT TTGGCTTTTG
  K
  CCTTTTCCTG TCCTATTTCA GACCCTCTGG CTCACTCCCA CAGAAGCTAA GCAAACGAAC
  TGGAATCAGT GGGTCTGCGT CCCCCACCCC CGGGGGGGGG GCATTTGAAT GTTAAGTTAA
  ACCAGGTTTT ATACTTTGGT GAAAGGAGCA AGGTGGTGAG ATTATCCAGT GATCCCTGGA
  GCATTCTTTC CTGTGTGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss397901890	MGP_WTSI_17_26675351	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	T	G	T	T	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs238027661					SNP	G	G	G	G	G	G	G	G	T	G	T	T	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901890	MGP_WTSI_17_26675351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757380 () rs orientation: forward

Symbol	Name	Function Class
Gm50275	predicted gene, 50275	166 bp upstream
Rr405114	regulatory region 405114	56 bp downstream
Tssr143246	transcription start site region 143246	54 bp downstream