rs238035977 SNP Detail

Summary

• ID
  rs238035977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77777859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGTGTT ACCAAAAGGT
  AAGTGTTAAA GAGCATGCTA ATGTGATTGG AAAGCTCTTC CTAAAACAAC ATCATCTTTA
  TATTTCAAAG TATTTTGTAA ACCAGGCCTG GCTTCTCCAA GAATTTTGTT TATTTTTTAA
  ACAGGGACAA GGTCTCACTA TGTAGCCCTG GCTGGCCTGG AACTTACTAT GTAGACCAGG
  Y
  TGGTCTTGAA CTCACAGAGA TCTGCCTGGC TCTGCTTCCT AGGGGCTGGC ATCAAATGCC
  TGGGGCAGTA AGCTCTGCTT CTTTATTATA ATTTTAGGGT GATTGAGCTT TCAGCCTTTT
  CCTAGAGATA GTATGACTTT GTTAGCGTTT CTCCTGCTAT AAAGTGACAC CATGACTACA
  GCAATTGTTA TATTCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss354556405	MGP_WTSI_2_77785572	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs238035977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354556405	MGP_WTSI_2_77785572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77777859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1040 bp distal
Cwc22	CWC22 spliceosome-associated protein	1140 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	931 bp downstream
Rr559852	regulatory region 559852	1391 bp distal
Rr559853	regulatory region 559853	650 bp distal
Tssr24874	transcription start site region 24874	1316 bp upstream
Tssr24875	transcription start site region 24875	1188 bp upstream
Tssr24876	transcription start site region 24876	1142 bp upstream
Tssr24877	transcription start site region 24877	1123 bp upstream