rs238036254 SNP Detail

Summary

• ID
  rs238036254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67062840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGTTTC CAAGTGCTGG
  GATTAAAGTC ATGCCCCTCC CCCAAGGCTC CTTCAAGGTT TTTTTTTTTT TATTCCAATA
  GGTTGAACCT GACAAAAAGC TATTGAATAT CCTGGCAATC TCAGATAGAA AGATATTTGC
  TATTATTGAG AAAAATATAC TAAGAATTTA GGGATAGACC AAAAAGAGTA CAGGAAATCT
  Y
  TTCAACGTCA CACAGGGCTT TGCTGAATAG GACCTCTCAG AAGGTGTGTG TGTGTGTGTG
  TGTGTGTATG TATGTATGTA TGTTTGATAT GTGTGAGAGG GAAGGGTTTT CACATGCTGT
  ATAGTTCATG TGGAAGTCAG AGGACGTTTT GCATTGATTC TTCCCTCTCC ACCTAATTTA
  GGTGGGGTCT CCTCATTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377898690	MGP_WTSI_9_67003365	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238036254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377898690	MGP_WTSI_9_67003365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67062840 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	7 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	4 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	66 bp distal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	827 bp downstream
Gm68695	predicted gene, 68695	295 bp upstream
Rr681887	regulatory region 681887	1868 bp distal
Rr681888	regulatory region 681888	1433 bp distal
Rr681889	regulatory region 681889	1055 bp proximal
Rr681890	regulatory region 681890	1496 bp proximal
Tssr90326	transcription start site region 90326	327 bp upstream
Tssr90327	transcription start site region 90327	294 bp upstream