rs238038722 SNP Detail

Summary

• ID
  rs238038722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46306493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCGCCC GCCGCGCCGC
  GGCCCCCGGC CATGCCCCCG CCCGCCCTCG GCCCCGGCCC GCCCGGACGG CCGCGGACGG
  CTCCCCGACA GCCAGCGCGA GCGCTTGGCC CGAGCCCGCC GGCTCCCACC GACGCACCGA
  GCGCTCGGCG GCGGCGGCGC CGAGGGCTCC GCAGCTCCGC AGAAGGAGGG GGCGCCGGCG
  R
  GAGGGGAGGG CGCGGGCTGG GGCGGGGACG TCGCGCGACG GAGCAGCACG GCGCGAGCCC
  GGCGCCGTGG GGAGGGCCGG CGGCCAGCGG GGGCGCATGC GTGGGGTCTC GCCAGGGGGC
  CGAGCTCGCG CTCTCGGGAG GCGGCTGTGG GAGGCGTCCA GAGCACCCTT CAGCTTGTCA
  GAATTGAGGG CTAAAGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402594153	MGP_WTSI_19_46392544	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238038722					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402594153	MGP_WTSI_19_46392544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46306493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10993	CpG island 10993	within coordinates
Psd	pleckstrin and Sec7 domain containing	within coordinates
Rr548704	regulatory region 548704	27 bp proximal
Tssr159621	transcription start site region 159621	94 bp upstream
Tssr159622	transcription start site region 159622	89 bp upstream
Tssr159623	transcription start site region 159623	within coordinates
Tssr159624	transcription start site region 159624	12 bp downstream
Tssr159625	transcription start site region 159625	69 bp downstream