rs238041392 SNP Detail

Summary

• ID
  rs238041392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20293254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA AGGCTGAGGA TGAGAACCTC
  R
  CCCTCCACCC GCCACAGTTT GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss924430537	MGP_WTSI_X_20427015	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238041392					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924430537	MGP_WTSI_X_20427015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20293254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22644	CpG island 22644	544 bp distal
Jade3	jade family PHD finger 3	within coordinates
Rr690392	regulatory region 690392	1317 bp distal
Rr690393	regulatory region 690393	1367 bp distal
Rr690394	regulatory region 690394	426 bp distal
Rr690395	regulatory region 690395	1022 bp distal
Rr690396	regulatory region 690396	667 bp distal
Tssr160640	transcription start site region 160640	1637 bp downstream
Tssr160641	transcription start site region 160641	1253 bp downstream
Tssr160642	transcription start site region 160642	1221 bp downstream