rs238044770 SNP Detail

Summary

• ID
  rs238044770
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55252376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAATCCT CCAGCCCGTG
  AGAGGCGAGG GAGTGGGCGT GTTGGAAGAT ACTGAGAAAA GATGACGGGG ACAAAGGAAA
  TATGCACAGC CAGGGTTTTA ACCACGTTCT GCGGTGGACG AGTGGAGCAG TGAGAAAGGC
  ACGCAGGTTG AGCCGGTTCC TCGCCTGTCG ATTTTTCCCT CGAGAGGAAT GCAGGGCGCA
  M
  TGCGGCCTTT GCGCAGAGTC CTAGGCGTGC ACGGGGAGGG TTGGCCGGTG ATGCGGCCGA
  CGGTTTCTGA ACCTTGGGTT CCCGCTCCTC CATCCCAACC ATCCAAATTA CGGATGAAAA
  GGGCTCCACT GTTGTTCAAG GACAGTCACA GAACCAGGAA AGGCGCACTT GGAAGTCCTG
  GGGCCAATGG CGGCCCAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391148698	MGP_WTSI_14_55633756	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238044770					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391148698	MGP_WTSI_14_55633756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55252376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63342	predicted gene, 63342	1705 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	535 bp upstream
Rr369830	regulatory region 369830	166 bp upstream
Rr369831	regulatory region 369831	385 bp upstream
Rr404108	regulatory region 404108	497 bp downstream
Rr492392	regulatory region 492392	45 bp proximal
Rr492393	regulatory region 492393	227 bp proximal
Rr492394	regulatory region 492394	546 bp proximal
Rr492395	regulatory region 492395	872 bp proximal
Rr492396	regulatory region 492396	1239 bp proximal
Tssr125743	transcription start site region 125743	611 bp upstream