rs238047599 SNP Detail

Summary

• ID
  rs238047599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44509909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCAGT TTCACTCTTC
  GTTTTTCTCT TCTCTTTCCT CACCTGGCTC TCTCCCCCGT TTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCC ATTTTTCTTC TTGGAGTCTC CTCTTATTTC TCCTATCTGG TTCTTTACTC
  TCTCCTCTCT CCACTTCTTA GCCTTCAGTT TTTCTCAGTC TGCCTGTAGA ATAGTGATTT
  Y
  CAACTTTAAT TTTCACATCT CCTAAAAGCC ACCCTCATCC ACTGTCACCT TGGCCTTCCC
  CAGTCCCTCT CCCACTCTCC AGATCCTACA CTGAGTGATT TGGAGGCCAT GCTCTTGGAG
  ACCAACTTGA GGAACTTCCC TGGACACACC CAGTGCCCTG TCCAGGGGCT CCTAGTCCCA
  AGTGAGAAAT GGTACCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201285	MGP_WTSI_11_44432584	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238047599					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201285	MGP_WTSI_11_44432584	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44509909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	1779 bp distal
Cpgi2763	CpG island 2763	453 bp distal
Cpgi2764	CpG island 2764	690 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	399 bp proximal
Ebf1	early B cell factor 1	within coordinates
Rr369170	regulatory region 369170	1769 bp downstream
Rr445653	regulatory region 445653	1755 bp distal
Rr445654	regulatory region 445654	366 bp distal
Tssr3469	transcription start site region 3469	1735 bp upstream
Tssr101029	transcription start site region 101029	1780 bp downstream
Tssr101030	transcription start site region 101030	1746 bp downstream
Tssr101031	transcription start site region 101031	1721 bp downstream
Tssr101032	transcription start site region 101032	1685 bp downstream
Tssr101033	transcription start site region 101033	1569 bp downstream
Tssr101034	transcription start site region 101034	1539 bp downstream
Tssr101035	transcription start site region 101035	1524 bp downstream
Tssr101036	transcription start site region 101036	1452 bp downstream
Tssr101037	transcription start site region 101037	1422 bp downstream
Tssr101038	transcription start site region 101038	1379 bp downstream
Tssr101039	transcription start site region 101039	1195 bp downstream
Tssr101040	transcription start site region 101040	1147 bp downstream
Tssr101041	transcription start site region 101041	947 bp downstream
Tssr101042	transcription start site region 101042	878 bp downstream
Tssr101043	transcription start site region 101043	859 bp downstream
Tssr101044	transcription start site region 101044	491 bp downstream
Tssr107570	transcription start site region 107570	1013 bp upstream