rs238049119 SNP Detail

Summary

• ID
  rs238049119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87677316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCCACC AAGCCTGATG
  ACCTGAGGTT GAACCCAGGG ACCCACATGG TAGAAGGTGA GAATCAAATC CCAAAACTTG
  TCATCTATGC CCACAACAGT GCCATAGCAT GGTACATATT CCCTCCCCTG CAACAGAAGT
  CAATCTAATG TTTTAAAGTC CATCTCCCCC AGTGTACCTA CTCTAGGCTA CAGTAAGGAC
  R
  CAGATTCCGT CCTCACCCCT AGCCCAAACC CCACGAAAGT TTTGATTTGC TTTCTGTAGT
  TTATATTTCT AGAATATCCG TGTAAATGTC ATCATAGAGT ATGTACTCAC GTATGTCCAT
  CTTCTTCCCC TCACCATAAA GTTTCTGGGC CGTTGGGTGT TCTCTACTAC AGCAGGTGAC
  AGCACTGGGC TATTCAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358783617	MGP_WTSI_3_87573931	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238049119					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358783617	MGP_WTSI_3_87573931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87677316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13336	CpG island 13336	814 bp distal
Pear1	platelet endothelial aggregation receptor 1	1054 bp upstream
Rr579541	regulatory region 579541	1651 bp distal
Rr579542	regulatory region 579542	1077 bp distal
Rr579543	regulatory region 579543	566 bp distal
Rr579544	regulatory region 579544	846 bp distal
Rr579545	regulatory region 579545	340 bp proximal
Rr579546	regulatory region 579546	456 bp proximal
Rr579547	regulatory region 579547	1111 bp proximal
Tssr33952	transcription start site region 33952	1049 bp upstream
Tssr33953	transcription start site region 33953	1034 bp upstream
Tssr33954	transcription start site region 33954	941 bp upstream