rs238050528 SNP Detail

Summary

• ID
  rs238050528
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74816044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGGGG ACAAGGTCTT
  CTAATATGTT GCCTTGATTA GCCTCAAATG TGCTATGTTG CCCAGGCTTG AACTTGCAAT
  GCTCCCACCA CAGCCTTTGA AGTACCGTGA ATATAAGAAT GAGCTATTTT TACCAGCATC
  AGTAAAAATT TAAAGATGTA AAGATGGGAG AATTGACTTG AGTACTAAAA AAGTAATTTT
  W
  AAAAATTCTC AATGCTAACA GTAATTCCCA GATCGAATAA TTTCCTTCTT TTTTTACCTC
  CACACAACGA CCTCCAGCAA GTCTTAGGGA TGAACTGTCA TAGACTTTAG TACTCTGGTA
  CAATCAAACG ATACACGGAG CAATTTACTT CTTCCACTCT CTGAGATTCC GTTTACCAGT
  AATGGGGATA ATAATAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890598	MGP_WTSI_11_74738720	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238050528					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890598	MGP_WTSI_11_74738720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74816044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3250	CpG island 3250			185 bp proximal
Gm72316	predicted gene, 72316			881 bp upstream
Rr451006	regulatory region 451006			1613 bp distal
Rr451007	regulatory region 451007			1411 bp distal
Rr451008	regulatory region 451008			745 bp distal
Rr451009	regulatory region 451009			869 bp distal
Rr451010	regulatory region 451010			within coordinates
Rr451011	regulatory region 451011			545 bp proximal
Rr451012	regulatory region 451012			720 bp proximal
Rr451013	regulatory region 451013			790 bp proximal
Rr451014	regulatory region 451014			892 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor			621 bp upstream
Srr	serine racemase			Intron
				Noncoding-Transcript-Variant
Tssr102917	transcription start site region 102917			598 bp upstream
Tssr102918	transcription start site region 102918			619 bp upstream
Tssr102919	transcription start site region 102919			660 bp upstream
Tssr102920	transcription start site region 102920			863 bp upstream
Tssr102921	transcription start site region 102921			1646 bp upstream
Tssr109155	transcription start site region 109155			440 bp downstream
Tssr109156	transcription start site region 109156			707 bp downstream