rs238056230 SNP Detail

Summary

• ID
  rs238056230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19350046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCGGACA CAAAACCAGG
  CAACAAAATC AGGATGCAAC AAGATGGAGG GGCAAAGCAC AGAAGCGGAG TGGGCCCTGC
  CGTAGGTGAG GGTTGCCATC CTCTTACACC TGCCGCTTCA TGCTTGAGCT CAGGTTAGAA
  CACTTGTGAG ATGATTTCTC TATTCTAAAT CTGACAGTAA TCCCTCGCGG GGGGGGGGGG
  S
  GGGGGGGGGA AGATGCACCT GGCCAGACTG CTAGGCTGGC TCAGAAGGTC CCAGAATGAC
  TATAGGCAGT TTTTGGCTCC TATGATTGCT GGACATCTCT CCCCATCCCT TTCTCCTCCC
  CTTCTCCCTC CCCTCTCTCT CCCTTTCCTT TCCTCCCTCT CCTCCTCTTC CTCTTCGTCC
  TGCTCCCCAC TCATCTCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	RIIIS/J
ss353271404	MGP_WTSI_2_19266862	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	RIIIS/J
rs238056230					SNP	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353271404	MGP_WTSI_2_19266862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19350046 () rs orientation: forward

Symbol	Name	Function Class
4930447M23Rik	RIKEN cDNA 4930447M23 gene	within coordinates
Cpgi11249	CpG island 11249	214 bp distal
Gm74632	predicted gene, 74632	997 bp upstream
Rr552453	regulatory region 552453	1008 bp distal
Rr552454	regulatory region 552454	373 bp distal
Rr552455	regulatory region 552455	400 bp distal
Rr552456	regulatory region 552456	within coordinates
Tssr16410	transcription start site region 16410	909 bp downstream
Tssr16411	transcription start site region 16411	377 bp downstream