rs238057626 SNP Detail

Summary

• ID
  rs238057626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121912627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTACACCA GACAGCACTC CTCTCACCAT TAAGCCTCAG
  CCTGCTGCTC TCCCACATTC TGCAAATCTA GAGGCCCTGT CGGGCACTGA GGATACTCCC
  W
  GGTGGTTCCC CATGTGTGCT TAAAGCAGAG CCCTAAGGGC TTGGTGCTAG TGGCTTTCTT
  TTCTTCCTGC TTCCTTTATG GCTGGGGCTC CTTTCTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320908547	CHEV_3_121821896	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238057626					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121912627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr584235	regulatory region 584235			within coordinates
Rr584236	regulatory region 584236			936 bp proximal