rs238065712 SNP Detail

Summary

• ID
  rs238065712
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATGGCA GTGAACGACA
  AAATGGCGTC CTGAACAGTT GGACTGATCA GGACAGCAAA GACAGCACCT ACAGCATGAG
  CAGCACCCTC ACGTTGACCA AGGACGAGTA TGAACGACAT AACAGCTATA CCTGTGAGGC
  CACTCACAAG ACATCAACTT CACCCATTGT CAAGAGCTTC AACAGGAATG AGTGTTAGAG
  M
  CAAAGGTCCT GAGACGCCAC CACCAGCTCC CCAGCTCCAT CCTATCTTCC CTTCTAAGGT
  CTTGGAGGCT TCCCCACAAG CGACCTACCA CTGTTGCGGT GCTCCAAACC TCCTCCCCAC
  CTCCTTCTCC TCCTCCTCCC TTTCCTTGGC TTTTATCATG CTAATATTTG CAGAAAATAT
  TCAATAAAGT GAGTCTTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815807	CHEV_6_70676754	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238065712					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703744 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	6 bp downstream
Igkc	immunoglobulin kappa constant	6 bp downstream
Rr158	regulatory region 158	809 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1325 bp downstream
Rr399685	regulatory region 399685	913 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	90 bp upstream
Tssr56956	transcription start site region 56956	927 bp downstream
Tssr56957	transcription start site region 56957	288 bp downstream
Tssr56958	transcription start site region 56958	272 bp downstream
Tssr56959	transcription start site region 56959	254 bp downstream
Tssr56960	transcription start site region 56960	239 bp downstream
Tssr56961	transcription start site region 56961	223 bp downstream
Tssr56962	transcription start site region 56962	211 bp downstream
Tssr56963	transcription start site region 56963	164 bp downstream
Tssr56964	transcription start site region 56964	153 bp downstream
Tssr56965	transcription start site region 56965	141 bp downstream
Tssr56966	transcription start site region 56966	133 bp downstream
Tssr56967	transcription start site region 56967	113 bp downstream
Tssr56968	transcription start site region 56968	83 bp downstream
Tssr56969	transcription start site region 56969	59 bp downstream
Tssr56970	transcription start site region 56970	40 bp downstream
Tssr56971	transcription start site region 56971	28 bp downstream
Tssr56972	transcription start site region 56972	within coordinates
Tssr56973	transcription start site region 56973	33 bp upstream
Tssr56974	transcription start site region 56974	65 bp upstream
Tssr56975	transcription start site region 56975	98 bp upstream
Tssr61321	transcription start site region 61321	251 bp upstream
Tssr61322	transcription start site region 61322	103 bp upstream
Tssr61323	transcription start site region 61323	22 bp upstream
Tssr61324	transcription start site region 61324	within coordinates
Tssr61325	transcription start site region 61325	58 bp downstream
Tssr61326	transcription start site region 61326	93 bp downstream
Tssr61327	transcription start site region 61327	107 bp downstream
Tssr61328	transcription start site region 61328	198 bp downstream